In Progress
Rhoades NA, and TM Hammond* (2021) “RNA editing controls meiotic drive by a Neurospora Spore killer” BioRXiv https://doi.org/10.1101/2020.12.30.424869
Published
Research Articles
Students from The Hammond Laboratory are listed in bold font
Corresponding authors are marked with an asterisk
Lohmar, JM, NA Rhoades, TM Hammond* and DW Brown* (2022) “Gene drive by Fusarium SKC1 is dependent on its competing allele” Fungal Genet Biol PMID 36341840 https:10.1016/j.fgb.2022.103749
Velazquez, A, E Webber, D O’Neil, T Hammond*, N Rhoades (2022) “Isolation of rfk-2UV, a mutation that blocks spore killing by Neurospora Spore killer-3” microPublication Biology PMID 35903779 https://doi.org/10.17912/micropub.biology.000604
Lohmar, JM, NA Rhoades, TN Patel, RH Proctor, TM Hammond*, DW Brown* (2022) “A-to-I mRNA editing controls spore death induced by a fungal meiotic drive gene in homologous and heterologous expression systems” Genetics 221:iyac029 PMID 35166849 https://doi.org/10.1093/genetics/iyac029
Rhoades, NA, TS Nguyen, G Witz, G Cecere, T Hammond, AK Mazur, and E Gladyshev* (2021) “Recombination-independent recognition of DNA homology for meiotic silencing in Neurospora crassa” Proc Natl Acad Sci USA 118:e2108664118 PMID 34385329 https://doi.org/10.1073/pnas.2108664118
Svedberg, J, AA Vogan, NA Rhoades, D Sarmarajeewa, DJ Jacobson, M Lascoux, TM Hammond, and H Johannesson* (2021) “An introgressed gene causes meiotic drive in Neurospora sitophila” Proc Natl Acad Sci USA 118:e2026605118 PMID 33875604 https://doi.org/10.1073/pnas.2026605118
Boone EC, H Xiao, M Vierling, L Decker, V Sy, R Kenndy, M Bonham, S Schmitz, A John, TM Hammond, and PKT Shiu* (2020) “An NCBP3-Domain Protein Mediates Meiotic Silencing by Unpaired DNA” G3 10:1919–1927 PMID 32291289 https://doi.org/10.1534/g3.120.401236
Rhoades, NA, EK Webber, and TM Hammond* (2020) “A nonhomologous end-joining mutant for Neurospora sitophila research” Fungal Genet Rep 64:Article 1 https://doi.org/10.4148/1941-4765.2172
Rhoades, NA, AM Harvey, DA Samarajeewa, J Svedberg, A Yusifov, A Abusharekh, P Manitchotpisit, DW Brown, KJ Sharp, DG Rehard, J Peters, X Ostolaza-Maldonado, J Stephenson, PKT Shiu, H Johannesson, and TM Hammond* (2019) “Identification of rfk-1, a meiotic driver undergoing RNA editing in Neurospora” Genetics 212:93–110 PMID 30918007 https://doi.org/10.1534/genetics.119.302122
Xiao H, TM Hammond, and PKT Shiu* (2019) “Suppressors of meiotic silencing by unpaired DNA” Noncoding RNA 5:Article 1 PMID 30696000 https://doi.org/10.3390/ncrna5010014
Svedberg, J, S Hosseini, J Chen, A Vogan, I Mozgova, L Hennig, P Manitchotpisit, A Abusharekh, T Hammond, M Lascoux, and H Johannesson* (2018) “Convergent evolution of complex rearrangements in two fungal meiotic drive elements” Nature comm 9:Article 4242 PMID 30315196 https://doi.org/10.1038/s41467-018-06562-x
Samarajeewa, DA, P Manitchotpisit, M Henderson, H Xiao, DG Rehard, KA Edwards, PKT Shiu, and TM Hammond* (2017) “An RNA recognition motif-containing protein functions in meiotic silencing by unpaired DNA” G3 7:2871–2882 PMID 28667016 https://doi.org/10.1534/g3.117.041848
Pyle, J, T Patel, B Merril, C Nsokoshi, M McCall, R Proctor, D Brown, and T Hammond* (2016) “A meiotic drive element in the maize pathogen Fusarium verticillioides is located within a 102 kb region of chromosome V” G3 6(8):2543–52 PMID 27317777 https://doi.org/10.1534/g3.116.029728
Smith, ZJ, S Bedore, S Spingler, and T Hammond* (2016) “A mus-51 RIP allele for transformation of Neurospora crassa” Fungal Genet Rep 62:1–7 PMID 28729897 https://doi.org/10.4148/1941-4765.1001
Decker, L, E Boone, H Xiao, B Shanker, S Boone, S Kingston, S Lee, T Perdue, P Pukkila, T Hammond, and P Shiu (2015) “Complex formation of RNA silencing proteins in the perinuclear region of Neurospora crassa” Genetics 199:1017–1021 PMID 25644701 https://doi.org/10.1534/genetics.115.174623
Samarajeewa, DA, PA Sauls, KJ Sharp, ZJ Smith, H Xiao, K Groskreutz, TL Malone, EC Boone, KA Edwards, PKT Shiu, ED Larson, and TM Hammond* (2014) “Efficient detection of unpaired DNA requires a member of the Rad54-Like Family of homologous recombination proteins” Genetics 198:895–904 PMID 25146971 https://doi.org/10.1534/genetics.114.168187
Harvey, AM, DG Rehard, KM Groskreutz, DR Kuntz, KJ Sharp, PKT Shiu, and TM Hammond* (2014) “A Critical Component of Meiotic Drive in Neurospora Is Located Near a Chromosome Rearrangement” Genetics 197:1165–1174 PMID 24931406 http://www.ncbi.nlm.nih.gov/pubmed/24931406
Hammond*, TM, H Xiao, E Boone, L Decker, S Lee, T Perdue, P Pukkila, and PKT Shiu* (2013) “Novel proteins required for meiotic silencing by unpaired DNA and siRNA generation in Neurospora crassa” Genetics 194:91–100 PMID 23502675 http://www.ncbi.nlm.nih.gov/pubmed/23502675
Hammond*, TM, W Spollen, L Decker, S Blake, G Springer, and PKT Shiu* (2013) “Identification of small RNAs associated with meiotic silencing by unpaired DNA” Genetics 194:279–284 PMID 23502674 http://www.ncbi.nlm.nih.gov/pubmed/23502674
Hammond*, TM, DG Rehard, H Xiao, and PKT. Shiu* (2012) “Molecular dissection of Neurospora Spore killer meiotic drive elements” Proc Natl Acad Sci USA 109:12093–12098 PMID 22753473 http://www.pnas.org/content/109/30/12093.long
Hammond, TM, DG Rehard, BC Harris, and PKT Shiu* (2012) “Fine-scale mapping in Neurospora crassa by using genome-wide knockout strains” Mycologia 104:231–3 PMID 22067301 https://doi.org/10.3852/11-062
Hammond, TM, H Xiao, EC Boone, TD Perdue, PJ Pukkila, and PKT Shiu* (2011) “SAD-3, a putative helicase required for Meiotic Silencing by Unpaired DNA, interacts with other components of the silencing machinery” G3 1:369–376 PMID 22384347 https://doi.org/10.1534/g3.111.000570
Hammond, TM, H Xiao, DG Rehard, and PKT Shiu* (2011) “Fluorescent and bimolecular-fluorescent protein tagging of genes at their native loci in Neurospora crassa using specialized double-joint PCR plasmids” Fungal Genet Biol 48:866–73 PMID 21664475 https://doi.org/10.1016/j.fgb.2011.05.002
Scherm, B, M Orru, V Balmas, F Spanu, E Azara, G Delogu, TM Hammond, NP Keller, and Q Migheli* (2011) “Altered trichothecene biosynthesis in TRI6-silenced transformants of Fusarium culmorum influences the severity of crown and foot rot on durum wheat seedlings” Mol Plant Pathol 12:759–71 PMID 21726376 https://doi.org/10.1111/j.1364-3703.2011.00709.x
Xiao, H., WG Alexander, TM Hammond, EC Boone, TD Perdue, PJ Pukkila, PKT Shiu* (2010) “QIP, a protein that converts duplex siRNA into single strands, is required for meiotic silencing by unpaired DNA” Genetics 186:119–26 PMID 20551436 https://doi.org/10.1534/genetics.110.118273
Alexander, WG, NB Raju, H Xiao, TM Hammond, TD Perdue, RL Metzenberg, PJ Pukkila, and PKT Shiu* (2008) “DCL-1 colocalizes with other components of the MSUD machinery and is required for silencing” Fungal Genet Biol 45:719–27 PMID 18036854 https://doi.org/10.1016/j.fgb.2007.10.006
Hammond, TM, MD Andrewski, MJ Roossinck, and NP Keller* (2008) “Aspergillus mycoviruses are targets and suppressors of RNA silencing” Euk Cell 7:350–357 PMID 18065651 https://doi.org/10.1128/EC.00356-07
Hammond, TM, JW Bok, MD Andrewski, Y Reyes-Domínguez, C Scazzocchio, and NP Keller* (2008) “RNA silencing gene truncation in the filamentous fungus Aspergillus nidulans” Euk Cell 7:339–349 PMID 18065653 https://doi.org/10.1128/EC.00355-07
Hammond, TM, D Tsitsigiannis, and NP Keller* (2007) “Development of an Arabidopsis thaliana-based bioassay for investigating seed colonization by mycotoxigenic Aspergillus species” Plant Pathol 56:848–854 https://doi.org/10.1111/j.1365-3059.2007.01644.x
McDonald, TR, D Brown, NP Keller*, and TM Hammond (2005) “RNA silencing of mycotoxin production in Fusarium and Aspergillus species” Mol Plant Microbe Int 18:539–545 PMID 15986923 https://doi.org/10.1094/MPMI-18-0539
Hammond, TM, and NP Keller* (2005) “RNA silencing in Aspergillus nidulans is independent of RNA dependent RNA polymerases” Genetics 169:607–617 PMID 15545645 https://doi.org/10.1534/genetics.104.035964
Review Articles and Book Chapters
Hammond*, TM (2017) “Sixteen years of meiotic silencing by unpaired DNA” pgs. 1–42 in Advances in Genetics, Volume 97, eds. T Friedman, JC Dunlap, and SF Goodwin, PMID: 28838355 https://doi.org/10.1016/bs.adgen.2016.11.001
Hammond, TM, and NP Keller (2007) “RNA silencing in the Aspergilli” pgs. 197–210 in The Aspergilli: Genomics, Medical Aspects, Biotechnology and Research Methods. eds. S. Osmani and G. Goldman. CRC Press.
McDonald, TR, D Noordermeer, YQ Zhang, TM Hammond, and NP Keller (2005) “The ST cluster revisited: Lessons from a genetic model.” In Aflatoxin and Food Safety. ed. H. Abbas. Marcel Dekker, Inc.
Hall, LM, TM Hammond, and NP Keller (2004) “Aspergillus nidulans as a model system to study secondary metabolism.” pgs. 197–222 in Secondary Metabolism in Model Systems. Recent Advances in Phytochemistry, Volume 38, ed. JT Romeo. Elsevier Ltd. Oxford.